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Galaxy is an open source, web-based platform for accessible, reproducible, and transparent computational biomedical research. It integrates a large number of popular statistical and bioinformatical tools for genomic sequencing data analysis.
Accessing Galaxy public server is hindered by the data file size limit, slow speed, as well as data security. To help USC users to truly take advantage of this powerful platform, we have implemented a local instance on our server in USC's High Performance Computing and Communications (HPCC) as part of the HPCC-NML Bioinformatics Computing Resource.
Galaxy provides a platform for many cutting-edge tools that can be used to perform many types of analysis, particularly for next-generation sequencing (NGS) data. The local Galaxy server is currently configured to specialize in ChIP-seq analysis.
To use Galaxy @ HPCC-NML, please follow the instruction on the HPCC-NML Bioinformatics Computing Resource page. Key steps are: