The HPCC-NML Bioinformatics Computing Resource
Funded by USC Vice President of Research Dr. Randolph Hall and the Norris Medical Library, the HPCC-NML Bioinformatics Computing Resource integrates USC’s High Performance Computing and Communications’ superior infrastructure with cutting-edge bioinformatics software to offer USC researchers a powerful solution to their growing computational needs of the analysis of large genomics data, in particular, the Next-Generation Sequencing data analysis.
In order to use this resource, you must have an HPCC account AND apply for access to the HPCC-NML Bioinformatics Computing Resource. Follow the detailed instruction here.
HPCC-NML and You
Software Installed
Partek Flow
- NGS raw reads alignment
- Start-to-finish RNA-seq analysis
Partek Genomic Suite
- Microarray analysis
- NGS aligned reads analysis
Galaxy
- NGS analysis
- Genomics data manipulation and analysis
Golden Helix SVS
- SNP and CNV analysis
- GWAS data analysis
Hardware Specifications
HPCC-NML head-node (1): HP ProLiant DL165 G7 Non-Hot Plug Server
- Two 12-core AMD Opteron™ processor Model 6176 (2.3GHz, 80W)
- 60GB memory
- HP 1TB SATA non-hot plug hard drive
HPCC-NML nodes (4): HP ProLiant DL165s G7 Non-Hot Plug Server
- Two 12-Core AMD Opteron™ processor Model 6176 (2.3GHz, 80W)
- 48GB memory
- HP 1TB SATA non-hot plug hard drive
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