What's New

Partek GS 6.6 beta is now released (can be installed concurrently with Partek GS 6.5). 
Some highlighted features included in Partek GS 6.6:

• Import BAM files directly without file format converting for NGS data.  Huge savings in import time and necessary hard drive space.
• New Hierarchical Clustering diagram with exposed configuration options
• Self Organizing Maps - Profile and SOM Fingerprinting is now included
• Methylation workflow for NGS and microarray
• Many others

Main Applications

• Conventional Expression Microarray Data Analysis: Quickly and reliably identify patterns in expression data.
• Exon Expression Data Analysis: Detect gene and/or exon level and alternative splice expression patterns; build and validate diagnostic and prognostic classifiers.
• Copy Number Analysis: Identify regions of amplification/deletion and LOH; integrate regions of copy number variation and LOH to gene/exon expression data.
• Promoter Tiling Array Data Analysis for ChIP-on-Chip Experiments: Identify transcription factor/DNA binding sites.
• Genotyping and SNP Association Data Analysis: Identify SNPs of interests in genotyping data; integrate genotype data with copy number and LOH data.

Noteworthy Features

• Comprehensive suite of advanced statistics and interactive data visualization specifically designed to reliably analyze and extract biological patterns from noisy data.
• Fast and memory efficient algorithms for handling high-dimensional genomic data on a personal computer.
• Easy-to-use workflow for guiding users through various types of data analysis processes.
• Generating meaning gene list for direct exporting to Ingenuity Pathway Analysis (IPA) for down stream functional analysis.
• Compatible and supporting raw/processed data from all major chip platforms.
• Automatically linking to NetAffx, UCSC Genome Browser, IGB, and other internet databases.
• Supporting Windows, Macintosh OS and Linux.