Main Applications

• HelixTree: core application for genetic association studies
• CNAM: processing raw intensity data, identifying and visualizing regions of copy number variation, performing association analysis.
• Whole Genome Analysis Module: performing GWAS analysis
• Sequence Analysis Module: advanced functional analysis tools for next-gen sequencing data (VCF files)
• PBAT: statistical analysis for family-based SNP and CNV association studies
• Regression Module: advanced linear and logistic regression
• SVS Viewer: free visualization tool for data sharing

Noteworthy Features

• Comprehensive suite of advanced analytic tools for managing, analyzing, and visualizing large-scale, complex genomic variation data. 
• Broad collection of intuitive workflows for SNP, LD, CNV, GWAS, Family-based, Homozygosity and many more genome variation analyses. 
• Efficient and easy-to-use data management and editing functions
• Fast and memory efficient algorithms for handling high-dimensional genomic data on a personal computer.
• Fully-programmatic scripting interface for advanced Python users
• Supporting direct data import from all major array platforms
• Supporting Windows, Mac OS and Linux.