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Partek Genomics Suite (PGS): Mar 2011

General Information

Major Topics:

  • Gene and exon expression data
  • Copy number variation data
  • Next-generation sequencing data 
  • New Methylation workflow

Key Features:

  • Comprehensive topics:
    Cover all major high-throughput data analysis topics
  • Task-orientated format:
    Go through each data analysis workflows step-by-step with live demos
  • Hands-on practices:
    Demo datasets and trial Partek GS will be provided. Check Training Materials section below
  • Professional consultation:
    Bring your own data and go through analysis with the guidance of the Partek customer support team
  • Full course descriptions:
    Training Syllabus

Time: Mar.24-25, 2011

Place: Aresty Auditorium, HSC

Registration is mandatory. 

Training Materials

Training Slides

  • Expression data analysis (PDF)
  • Copy number data analysis (PDF)
  • RNA-seq data analysis (PDF)
  • ChIP-seq and MeDIP data analysis (PDF)

Training Agenda

Thursday March 24, 2011

Overview of Partek Genomic Suite; Microarray-based Gene Expression and Genetic Variation (SNP and copy number) Data Analysis Workflows

Xiaowen Wang, Ph.D., Field Application Specialist

9:00 a.m.       Overview of Partek Genomic Suite

9:45 a.m.       Morning Coffee Break

10:00 a.m.     Array-based Gene Expression Data Analysis Workflow

12:00 p.m.     Lunch Break

1:00 p.m.       Exon Array Data Analysis Workflow

1:30 p.m.       Hands-on Practices for Gene Expression Analysis

2:30 p.m.       Afternoon Break

2:45 p.m.       Copy Number/SNP/LOH Data Analysis Workflow

5:00 p.m.       End of Day 1

Friday March 25, 2011

Next-Gen Sequencing Data Analysis: RNA-seq and ChIP-seq workflows; Methylation Data Analysis Overview

Ryan Peters, Ph.D., Field Application Specialist

9:00 a.m.       RNA-seq Data Analysis Workflow and NGS Alignment Tools (Part I)

10:15 a.m.     Morning Coffee Break

10:30 a.m.     RNA-seq Data Analysis Workflow and NGS Alignment Tools (Part II)

12:00 p.m.     Lunch Break

1:00 p.m.       ChIP-seq Data Analysis Workflow

3:00 p.m.       Afternoon Break

3:15 p.m.       Methylation Data Analysis Workflow

4:00 p.m.       Open Lab (Q&A)

5:00 p.m.       End of Day 2 and the onsite training